import setuptools from setuptools.extension import Extension from distutils.command.build_ext import build_ext as DistUtilsBuildExt class BuildExtension(setuptools.Command): description = DistUtilsBuildExt.description user_options = DistUtilsBuildExt.user_options boolean_options = DistUtilsBuildExt.boolean_options help_options = DistUtilsBuildExt.help_options def __init__(self, *args, **kwargs): from setuptools.command.build_ext import build_ext as SetupToolsBuildExt # Bypass __setatrr__ to avoid infinite recursion. self.__dict__['_command'] = SetupToolsBuildExt(*args, **kwargs) def __getattr__(self, name): return getattr(self._command, name) def __setattr__(self, name, value): setattr(self._command, name, value) def initialize_options(self, *args, **kwargs): return self._command.initialize_options(*args, **kwargs) def finalize_options(self, *args, **kwargs): ret = self._command.finalize_options(*args, **kwargs) import numpy self.include_dirs.append(numpy.get_include()) return ret def run(self, *args, **kwargs): return self._command.run(*args, **kwargs) extensions = [ Extension( 'utils.compute_overlap', ['utils/compute_overlap.pyx'] ), ] setuptools.setup( cmdclass={'build_ext': BuildExtension}, packages=setuptools.find_packages(), ext_modules=extensions, setup_requires=["cython>=0.28", "numpy>=1.14.0"] )